STARE
latest
Gettings started
PSCMs and PSEMs
Affinity summarisation
Separate ABC-scoring
Binary output
Patch notes
v1.0.4
v1.0.3
v1.0.2
v1.0.1
Troubleshooting
References
STARE
STARE - Look into TF regulation on gene level leveraging an adapted Activity-By-Contact score
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STARE - Look into TF regulation on gene level leveraging an adapted Activity-By-Contact score
¶
Gettings started
Installing STARE
Get started and test runs
Input and options
Required input
Other input options
-b / –bed_file
-n / –column
-f / –contact_folder
-r / –existing_abc
Output
ABC output
Gene-TF-matrices
Output per activity column (-n)
Computational power and parallelisation
PSCMs and PSEMs
Affinity summarisation
Gene window
ABC-scoring
Not-adapted ABC-scoring
Separate ABC-scoring
Binary output
ExampleOutput_Reshape_Binary.bin.gz
and
ExampleOutput_Reshape_Meta.txt
Byte-order / Endianness
Patch notes
v1.0.4
v1.0.3
v1.0.2
v1.0.1
Troubleshooting
Index of activity columns
Header in bed-files
Gene annotation and gene IDs
The
chr
prefix
Is it compressed?
Still not working?
References
Read the Docs
v: latest
Versions
latest
stable
Downloads
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